Author

Alan B. Cantor

Boston Children's Hospital

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:mouse· 2 Assay:spatial transcriptomics· 2 Assay:ChIP-seq· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Christian A. Reardon-LochbaumiD· 2 shared Jeffrey R. MoffittiD· 2 shared Paolo CadinuiD· 2 shared Alireza Ghamari· 1 shared Andrew J. WooiD· 1 shared Bertrand Wong· 1 shared Brianna R. WatsoniD· 1 shared Dhaval Hathiwala· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersGenomics

Christian A. Reardon-LochbaumORCID

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3 papers

Recent·Most cited

RNA-aware tissue preservation workflows for high-quality spatial transcriptomics

Paolo Cadinu, Christian A. Reardon-Lochbaum, Hao Zhang, Katerina Kalemaki, Brianna R. Watson, Stelios M. Smirnakis, Scott B. Snapper, Alan B. Cantor, Jeffrey R. Moffitt

This paper introduces an RNA-aware preservation method, RIPIN, that improves spatial transcriptomics data quality by inhibiting RNase activity across human and mouse tissues.

bioRxiv · Sep 11, 2026 · PreprintGenomics

Protocol Optimization Improves the Performance of Multiplexed RNA Imaging

Josh J. Luce, Christian A. Reardon-Lochbaum, Paolo Cadinu, Rosalind J. Xu, Jose Aceves-Salvador, Evangelia Semizoglou, Bertrand Wong, Iris Lopez, Alan B. Cantor, William R. Renthal, Jeffrey R. Moffitt

This study optimizes MERFISH protocols to improve RNA imaging performance in cell culture and tissue samples.

Scientific Reports · Aug 31, 2025Peer-reviewedGenomics

Histone demethylome map reveals combinatorial gene regulatory functions in embryonic stem cells

Yogesh Kumar, Pratibha Tripathi, Pushkar Dakle, Majid Mehravar, Varun K. Pandey, Michael J. Bullen, Zhongming Zhang, Dhaval Hathiwala, Marc A. Kerenyi, Andrew J. Woo, Alireza Ghamari, Alan B. Cantor, Lee H. Wong, Jonghwan Kim, Kimberly Glass, , Partha Pratim Das

The paper identifies combinatorial functions of histone demethylases in gene regulation of mouse embryonic stem cells by analyzing their genome-wide binding patterns.

bioRxiv · Aug 27, 2020 · PreprintGenomics