Farnoush Farahpour

This paper develops a phenotype-structured model to study how proliferation heterogeneity affects tumor growth and treatment response, showing that optimal proliferation rates shift with tumor size and treatment regimes.

scBubbletree provides a scalable visualization method for scRNA-seq data by clustering cells into bubbles on dendrograms, enabling quantitative assessment and biological interpretation.

The paper introduces an eco-evolutionary model showing that trade-offs between replication rate and competitive ability lead to structured communities with high diversity through self-organization.