Author

Jörg Fallmann

Leipzig UniversityORCID 0000-0002-4573-9939Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Approach:machine learning (classical)· 2 Research Focus:software / tool· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

Florian EggenhoferiD· 2 shared Peter Florian StadleriD· 2 shared Adam Caprez· 1 shared Alex ReynoldsiD· 1 shared Alexander JungeiD· 1 shared Andreas SjödiniD· 1 shared Anthony BretaudeauiD· 1 shared Arne Kratz· 1 shared

Activity by Year

2015-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Florian EggenhoferORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Tailored machine learning models for functional RNA detection in genome-wide screens

Christopher Klapproth, Siegfried Zötzsche, Felix Kühnl, Jörg Fallmann, Peter Florian Stadler, Sven Findeiß

The paper introduces a software framework for training and evaluating machine learning models to detect functional RNA in genome-wide screens, demonstrating its use in Drosophila melanogaster.

NAR Genomics and Bioinformatics · Jul 5, 2023Peer-reviewedBioinformatics

Supervised and Unsupervised Classification of lncRNA Subtypes

Rituparno Sen, Jörg Fallmann, Maria Emília M. T. Walter, Peter Florian Stadler

The paper investigates whether host gene function or mechanisms correlate with payload type in lncRNAs, finding no significant association beyond payload type.

bioRxiv · Jul 20, 2020 · PreprintBioinformatics

Bioconda: A sustainable and comprehensive software distribution for the life sciences

Björn Grüning, Ryan Dale, Andreas Sjödin, Brad Chapman, Jillian Rowe, Christopher H. Tomkins-Tinch, Renan Valieris, Adam Caprez, Bérénice Batut, Mathias Haudgaard, Thomas Cokelaer, Kyle A. Beauchamp, Brent S. Pedersen, Youri Hoogstrate, Anthony Bretaudeau, , Matthew L. Workentine

Bioconda provides a sustainable, comprehensive distribution of bioinformatics software using Conda for reproducible analysis across platforms.

Nature Methods · Jun 25, 2018Peer-reviewedBioinformatics

ViennaNGS: A toolbox for building efficient next-generation sequencing analysis pipelines

Michael T. Wolfinger, Jörg Fallmann, Florian Eggenhofer, Fabian Amman

ViennaNGS provides Perl modules to build efficient NGS analysis pipelines with tools for data processing, read mapping, RNA abundance normalization, and integration with UCSC genome browser.

F1000Research · Feb 20, 2015Peer-reviewedBioinformatics