Stefan Schulze

This study isolates and characterizes extracellular vesicles from Aloe vera gel, showing that mature manually extracted vesicles have superior antioxidant, anti-inflammatory, and antifibrotic effects.

TaHL-PTM improves PTM prediction by addressing tokenization issues in decoder-only PLMs, achieving better performance on residue-level tasks.

ProtPen combines sequence and structure-based methods to annotate proteins of unknown function across proteomes with >90% accuracy.

This study identifies a secreted small molecule in Haloferax volcanii that mediates morphology and motility transitions via quorum sensing, with DdfA and CirA as key regulators.

PeptideForest improves peptide identification by integrating multiple search engines and increases PSMs with q-value <1% without compromising quantification quality.

The paper introduces a standardized metadata format for proteomics datasets to improve reusability and integration across public repositories.

SugarPy enables glycoproteome analysis without glycan databases, validated on human breast milk and other organisms with uncommon glycans.