Author

Km Shams‐Ud‐Doha

Sanford Burnham Prebys Medical Discovery InstituteORCID 0000-0002-4773-3776Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Synthetic Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell-cell communication· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1 Assay:protein structure· 1

Frequent Co-Authors

Bjørn Gunnar Rude VoldborgiD· 2 shared Caressa M. Robinson· 2 shared Linus WeißiD· 2 shared Mojtaba Samoudi· 2 shared Nathan E. LewisiD· 2 shared Alex Rosa CamposiD· 1 shared Alexandre Rosa CamposiD· 1 shared Bradley Robasky· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersSystems Biology

Bjørn Gunnar Rude VoldborgORCID

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2 papers

Recent·Most cited

Inferring secretory and metabolic pathway activity from omic data with secCellFie

Helen O. Masson, Mojtaba Samoudi, Caressa M. Robinson, Chih-Chung Kuo, Linus Weiß, Km Shams‐Ud‐Doha, Alex Rosa Campos, Vijay Tejwani, Hussain Dahodwala, P Ménard, Bjørn Gunnar Rude Voldborg, Bradley Robasky, Susan T. Sharfstein, Nathan E. Lewis

The paper introduces secCellFie, a tool that infers secretory and metabolic pathway activity from omic data, demonstrating its application in immune cells, NAFLD hepatokine secretion, and antibody production in Chinese Hamster Ovary cells.

Metabolic Engineering · Jan 1, 2024Peer-reviewedSystems Biology

In situ detection of protein interactions for recombinant therapeutic enzymes

Mojtaba Samoudi, Chih‐Chung Kuo, Caressa M. Robinson, Km Shams‐Ud‐Doha, Song‐Min Schinn, Stefan Kol, Linus Weiß, Sara Petersen Bjørn, Bjørn Gunnar Rude Voldborg, Alexandre Rosa Campos, Nathan E. Lewis

The paper identifies protein-protein interactions supporting recombinant protein secretion using BioID and Bayesian modeling, finding key roles for oxidative folding enzymes in disulfide bond formation.

Biotechnology and Bioengineering · Nov 10, 2020Peer-reviewedSynthetic Biology