Author

Jakke Neiro

University of OxfordORCID 0000-0002-5077-4958Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 2 Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Aziz A. AboobakeriD· 2 shared Anamaria ElekiD· 1 shared Anish DattaniiD· 1 shared Anna Schönauer· 1 shared Arnau Sebé-PedrósiD· 1 shared Divya SridhariD· 1 shared Helena García-CastroiD· 1 shared Jon PermanyeriD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersDevelopmental Biology

Aziz A. AboobakerORCID

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2 papers

Recent·Most cited

Identification of putative enhancer-like elements predicts regulatory networks active in planarian adult stem cells

Jakke Neiro, Divya Sridhar, Anish Dattani, Aziz A. Aboobaker

The paper identifies enhancer-like elements in planarian adult stem cells using epigenetic and expression data, and links them to regulatory networks involved in regeneration.

eLife · Aug 23, 2022Peer-reviewedDevelopmental Biology

ACME dissociation: a versatile cell fixation-dissociation method for single-cell transcriptomics

Helena García-Castro, Nathan J. Kenny, Marta Iglesias, Patricia Álvarez‐Campos, Vincent Mason, Anamaria Elek, Anna Schönauer, Victoria A. Sleight, Jakke Neiro, Aziz A. Aboobaker, Jon Permanyer, Manuel Irimia, Arnau Sebé-Pedrós, Jordi Solana

The paper introduces ACME, a cell fixation-dissociation method for single-cell transcriptomics that preserves RNA integrity and enables cryopreservation and sorting, validated with SPLiT-seq in planarians.

Genome biology · Apr 7, 2021Peer-reviewedSystems Biology