Author

Marieke J. Rozendaal

CHU Sainte-Justine Research CenterORCID 0000-0002-5087-1491Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:long-read sequencing· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Bastien Paré· 2 shared Martin A. SmithiD· 2 shared Mélanie Sagniez· 2 shared Shawn M. Simpson· 2 shared Alexandre RouetteiD· 1 shared Anshul BudhrajaiD· 1 shared Clément Vinet-Ouellette· 1 shared Daniel SinnettiD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Bastien Paré

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Author profile →

2 papers

Recent·Most cited

Assembly Arena: Benchmarking RNA isoform reconstruction algorithms for nanopore sequencing

Mélanie Sagniez, Anshul Budhraja, Bastien Paré, Shawn M. Simpson, Clément Vinet-Ouellette, Marieke J. Rozendaal, Martin A. Smith

The paper benchmarks RNA isoform reconstruction algorithms using nanopore sequencing data to evaluate their accuracy in transcriptome assembly.

bioRxiv · Mar 21, 2024 · PreprintBioinformatics

Real-time molecular classification of leukemias

Mélanie Sagniez, Shawn M. Simpson, Maxime Caron, Marieke J. Rozendaal, Bastien Paré, Thomas Sontag, Sylvie Langlois, Alexandre Rouette, Vincent‐Philippe Lavallée, Sonia Cellot, Daniel Sinnett, Thai Hoa Tran, Martin A. Smith

This study demonstrates real-time transcriptomic profiling using nanopore sequencing and a neural network classifier to classify childhood acute lymphoblastic leukemia subtypes efficiently.

medRxiv · Jun 22, 2022 · PreprintGenetic & Genomic Medicine