Author

Carlos Ortiz‐Ramírez

Centro de Investigación y de Estudios Avanzados del Instituto Politécnico NacionalORCID 0000-0002-5166-1955Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Immunology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

David P. JacksoniD· 2 shared Kenneth D. BirnbaumiD· 2 shared Marcela Hernández-CoronadoiD· 2 shared T GingerasiD· 2 shared Aarón Espinosa‐Jaime· 1 shared Adolfo Rojas-HidalgoiD· 1 shared Alexander DobiniD· 1 shared Alicia ColomboiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersGenomics

David P. JacksonORCID

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Author profile →

4 papers

Recent·Most cited

The genetic architecture of leaf vein density traits and its importance for photosynthesis in maize

José L. Coyac-Rodríguez, Sergio Pérez-Limón, Elizabeth Hernandez-Jaimes, Marcela Hernández-Coronado, Daniel Camo-Escobar, Ana Laura Alonso‐Nieves, María De Jesús Ortega-Estrada, Nicole Gomez-Capetillo, Ruairidh J. H. Sawers, Carlos Ortiz‐Ramírez

The paper examines the genetic basis of leaf vein density in maize and links it to photosynthesis, finding that higher vein density correlates with increased photosynthetic rates in small intermediate veins.

bioRxiv · Jan 15, 2026 · PreprintPlant Biology

SiteCELL enables on-site PBMCs purification and cryopreservation for immune single cell profiling of diverse ancestries

Aarón Espinosa‐Jaime, Octavio Zambada-Moreno, José Antonio Corona-Gómez, M. Ortega, Marcela Hernández-Coronado, Bárbara dos Santos Dias, Larissa Alvez Diniz, Laura Leaden, Guilherme Cesar Martelossi Cebinelli, Doménica Marchese, Adolfo Rojas-Hidalgo, Emiliano Vicencio, Diego Pérez-Stuardo, Sebastián Urquiza-Zurich, Marisol Espitia Fajardo, , Carlos Ortiz‐Ramírez

SiteCELL enables on-site purification and cryopreservation of PBMCs for immune single cell profiling, performing as well as Ficoll density gradient in both lab and rural settings.

bioRxiv · Sep 30, 2025 · PreprintImmunology

Ground tissue circuitry regulates organ complexity in cereal roots

Carlos Ortiz‐Ramírez, Poliana Coqueiro Dias, Sanqiang Zhang, Edgar Demesa-Arévalo, Zhe Yan, Xiosa Xu, Ramin Rahni, T Gingeras, David P. Jackson, Kimberly L. Gallagher, Kenneth D. Birnbaum

The paper uses single-cell RNA-seq to map the maize root transcriptome and identifies a mechanism regulating cortex layer number through the SHR signaling pathway.

bioRxiv · Apr 28, 2021 · PreprintGenomics

Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud

Liya Wang, Zhenyuan Lu, Melissa delaBastide, Peter Van Buren, Xiaofei Wang, Cornel Ghiban, Michael Regulski, Jörg Drenkow, Xiaosa Xu, Carlos Ortiz‐Ramírez, Cristina Fernandez Marco, Sara Goodwin, Alexander Dobin, Kenneth D. Birnbaum, David P. Jackson, , T Gingeras

The paper describes the development of a cloud-based platform for managing, analyzing, and distributing MaizeCODE data, enhancing reproducibility and accessibility.

Frontiers in Plant Science · Mar 31, 2020Peer-reviewedBioinformatics