Helen Zhu

Enigma: An Efficient Model for Deciphering Regulatory Genomics

Enigma is an efficient regulatory genomics model that achieves competitive performance with state-of-the-art models while significantly reducing computational cost.

FlashRNA: An Efficient Model for Regulatory Genomics

FlashRNA improves computational efficiency for genomic sequence-to-function models while maintaining or enhancing predictive performance across multiple tasks.

Single-cell mapper (scMappR): using scRNA-seq to infer cell-type specificities of differentially expressed genes

scMappR assigns cell-type specificity scores to bulk RNA-seq DEGs using scRNA-seq data and deconvolution methods, showing accurate assignment in kidney regeneration analysis.

Integrative pathway enrichment analysis of multivariate omics data

ActivePathways integrates multivariate omics data to identify enriched pathways, revealing cancer driver genes and prognostic pathways in breast cancer.