Author

Patrick E. McDonel

University of Massachusetts Chan Medical SchoolORCID 0000-0002-5254-3635Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Patrick E. McDonel1 paper

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:Hi-C· 1 Organism:human· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Manuel G. GarberiD· 2 shared Alex K. ShalekiD· 1 shared Alexander A. Shishkin· 1 shared Ali PallaiD· 1 shared Amy Y. ChowiD· 1 shared Barbara Tabak· 1 shared Christine S. ChengiD· 1 shared Elisa R. DonnardiD· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersGenomics

Manuel G. GarberORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintApr 15, 2020

Single-cell analysis of upper airway cells reveals host-viral dynamics in influenza infected adults

Yuming Cao, Zhiru Guo, Pranitha Vangala…·Manuel G. Garber

The paper uses single-cell RNA sequencing to study influenza infection in human nasal washes, identifying a novel goblet cell population and tracking viral variation across infected individuals.

19 citations

GenomicsCellPeer-reviewedJun 7, 2018

Higher-order inter-chromosomal hubs shape 3-dimensional genome organization in the nucleus

Sofia A. Quinodoz, Noah Ollikainen, Barbara Tabak…·Mitchell Guttman

The paper introduces SPRITE, a method for detecting higher-order DNA interactions, and shows that nuclear bodies act as inter-chromosomal hubs shaping 3D genome organization.

893 citationstop 1%

Hi-Cexperimental assay