Author

Jackson Orem

Uganda Cancer InstituteORCID 0000-0002-5366-9010Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:whole-genome sequencing· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Andrew J. J. MungalliD· 1 shared Anne L. McCartneyiD· 1 shared Benon Byamugisha AsiimweiD· 1 shared Carolyn NakisigeiD· 1 shared David Patrick KateeteiD· 1 shared Edgar KigoziiD· 1 shared Eric Chuah· 1 shared Fahad LwigaleiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenomics

Andrew J. J. MungallORCID

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2 papers

Recent·Most cited

Comparative analyses of Gram-negative bacteria isolated from cancer patients with bacteraemia at the Uganda Cancer Institute

Margaret Lubwama, Lesley Hoyles, Anne L. McCartney, David Patrick Kateete, Freddie Bwanga, Edgar Kigozi, Leymon Kalema, Benon Byamugisha Asiimwe, George Katende, Fahad Lwigale, Simon Sekyanzi, Nixon Niyonzima, Jackson Orem, Henry Ddungu, Joyce Kambugu, , Jody Anne Winter

This study shows that transporting bacterial DNA at ambient temperature from Uganda to the UK allows high-quality whole-genome sequencing, revealing AMR patterns and misidentification issues in Gram-negative bacteria from cancer patients.

bioRxiv · Jul 6, 2026 · PreprintMicrobiology

Genomic structures and regulation patterns at HPV integration sites in cervical cancer

Vanessa Porter, Michelle Ng, Kieran O’Neill, Signe MacLennan, Richard Corbett, Luka Culibrk, Zeid Hamadeh, Marissa Iden, Rachel Schmidt, Shirng‐Wern Tsaih, Carolyn Nakisige, Martin Origa, Jackson Orem, Glenn Chang, Jeremy Fan, , Marco A. Marra

The paper uses long-read sequencing to analyze HPV integration sites in cervical cancer genomes, identifying structural and epigenetic impacts of integration.

Genome Research · Apr 1, 2025Peer-reviewedGenomics