Author

Jeremy Fan

BC Cancer Agency

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetic & Genomic Medicine· 2 Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 4 Research Focus:gene regulatory network inference· 3 Organism:human· 3 Assay:whole-genome sequencing· 3 Research Focus:benchmarking· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Approach:benchmark study· 1

Frequent Co-Authors

Kieran O’NeilliD· 3 shared Steven J.M. JonesiD· 3 shared Vanessa PorteriD· 3 shared Andrew J. J. MungalliD· 2 shared Eric Chuah· 2 shared Erin PleasanceiD· 2 shared Fritz Joachim SedlazeckiD· 2 shared Glenn ChangiD· 2 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenetic & Genomic Medicine

Kieran O’NeillORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Genomic structures and regulation patterns at HPV integration sites in cervical cancer

Vanessa Porter, Michelle Ng, Kieran O’Neill, Signe MacLennan, Richard Corbett, Luka Culibrk, Zeid Hamadeh, Marissa Iden, Rachel Schmidt, Shirng‐Wern Tsaih, Carolyn Nakisige, Martin Origa, Jackson Orem, Glenn Chang, Jeremy Fan, , Marco A. Marra

The paper uses long-read sequencing to analyze HPV integration sites in cervical cancer genomes, identifying structural and epigenetic impacts of integration.

Genome Research · Apr 1, 2025Peer-reviewedGenomics

Long-read sequencing of an advanced cancer cohort resolves rearrangements, unravels haplotypes, and reveals methylation landscapes

Kieran O’Neill, Erin Pleasance, Jeremy Fan, Vahid Akbari, Glenn Chang, Katherine Dixon, Veronika Csizmók, Signe MacLennan, Vanessa Porter, Andrew Galbraith, Cameron J. Grisdale, Luka Culibrk, John H. Dupuis, Richard Corbett, James Hopkins, , Steven J.M. Jones

This paper presents a long-read sequencing dataset of cancer samples, showing its ability to resolve structural variants, haplotypes, and methylation patterns in precision medicine.

Cell Genomics · Oct 14, 2024Peer-reviewedGenetic & Genomic Medicine

The benefit of a complete reference genome for cancer structural variant analysis

Luis F. Paulin, Jeremy Fan, Kieran O’Neill, Erin Pleasance, Vanessa Porter, Steven J.M. Jones, Fritz Joachim Sedlazeck

This paper shows that using a complete reference genome improves the accuracy and reduces false positives in detecting structural variants in cancer genomes.

medRxiv · Mar 15, 2024 · PreprintGenetic & Genomic Medicine

BugSeq: a highly accurate cloud platform for long-read metagenomic analyses

Jeremy Fan, Steven Huang, Samuel D. Chorlton

BugSeq is a cloud-based metagenomic classifier for nanopore long-read data that outperforms existing tools in accuracy and speed.

BMC Bioinformatics · Mar 25, 2021Peer-reviewedBioinformatics