Author

James L. Zehnder

Stanford Health CareORCID 0000-0002-5380-303XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:experimental assay· 3 Research Focus:variant calling· 3 Assay:bulk RNA-seq· 2 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Christian A. KunderiD· 3 shared Helio A. Costa· 3 shared Carlos D. BustamanteiD· 2 shared Anandi KrishnaniD· 1 shared Brandon Rice· 1 shared Carol D. Jones· 1 shared Cecelia PerkinsiD· 1 shared Chris J. Troll· 1 shared

Activity by Year

2018-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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3 shared papersGenomics

Christian A. KunderORCID

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Author profile →

4 papers

Recent·Most cited

Platelet transcriptome yields progressive markers in chronic myeloproliferative neoplasms and identifies putative targets of therapy

Zhu Shen, Wenfei Du, Cecelia Perkins, Lenn Fechter, Vanita S. Natu, Holden Terry Maecker, Jesse W. Rowley, Jason R. Gotlib, James L. Zehnder, Anandi Krishnan

The paper identifies platelet transcriptome markers for predicting disease progression in MPNs and develops a machine learning model to predict advanced MF with high accuracy.

Blood · Nov 5, 2021Peer-reviewedGenomics

STAMPede: A Precision Oncology Catalogue of Solid Tumors

Jessica W. Chen, Haik Kalantarian, Christian A. Kunder, James L. Zehnder, Henning Stehr, Helio A. Costa

STAMPede is a web-based portal for visualizing somatic tumor sequencing data from a solid tumor oncology panel, enabling query and display of gene-, variant-, and cancer-level summary statistics.

bioRxiv · Sep 18, 2020 · PreprintGenomics

Development and clinical validation of a targeted RNAseq panel (Fusion-STAMP) for diagnostic and predictive gene fusion detection in solid tumors

Erik Nohr, Christian A. Kunder, Carol D. Jones, Shirley C. Sutton, Eula Fung, Hongbo Zhu, Sharon J. Feng, Linda Gojenola, Carlos D. Bustamante, James L. Zehnder, Helio A. Costa

The paper develops and validates a targeted RNAseq panel (Fusion-STAMP) for detecting gene fusions in solid tumors, showing high sensitivity and specificity.

bioRxiv · Dec 10, 2019 · PreprintGenomics

Structural variation detection by proximity ligation from FFPE tumor tissue

Chris J. Troll, Nicholas H. Putnam, Paul D. Hartley, Brandon Rice, Marco Blanchette, Sameed M. Siddiqui, Javkhlan-Ochir Ganbat, Martin P. Powers, Christian A. Kunder, Carlos D. Bustamante, James L. Zehnder, Richard Edward Green, Helio A. Costa

This paper develops a method called Fix-C to detect structural variations in FFPE tumor samples, achieving high concordance with FISH assays and identifying novel variations.

bioRxiv · Feb 27, 2018 · PreprintGenomics