Jacqueline Batley

This paper develops an unsupervised machine learning framework for variant quality recalibration in crops, enabling high-quality variant discovery without reference datasets.

This study constructs the largest wheat pangenome to identify gene variants in landraces that are absent in modern cultivars, highlighting their potential for improving wheat resilience.

This study sequenced the genome of Talaromyces trachyspermus to identify genes related to biocontrol mechanisms, revealing secondary metabolite biosynthesis clusters and enzymes involved in plant growth promotion.

The paper investigates genomic stability and fertility in synthetic Brassica allohexaploids, finding low frequencies of euploids and significant variation in karyotype stability across genotypes.

crosshap visualizes local haplotype structures and associations with traits using density-based clustering and visualization tools.

This paper introduces a DNABERT-based NLP model to identify lncRNAs from genomic sequences across plant species, achieving accuracies between 57.9% and 83.4%.

The paper analyzes allele segregation in F1 hybrids of Brassica hexaploids, finding no consensus pattern in genomic rearrangements and no significant improvement in genome stability.

The paper clones a new avirulence gene, AvrLmS-Lep2, using two independent methods and confirms its role in inducing resistance in Brassica napus.

RefKA assembles large complex genomes using long-read data with reduced computing requirements by binning a reference genome and parallelizing assembly steps.