Author

Jakob Petereit

The University of Western AustraliaORCID 0000-0003-2159-0380Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Assay:GWAS summary statistics· 1 Organism:plant (other)· 1 Research Focus:software / tool· 1

Frequent Co-Authors

David EdwardsiD· 3 shared Jacqueline BatleyiD· 3 shared Philipp E. BayeriD· 3 shared Cassandria G. Tay FernandeziD· 2 shared Brady JohnstoniD· 1 shared Brett ChapmaniD· 1 shared Cécile MonatiD· 1 shared Chengdao LiiD· 1 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersBioinformatics

David EdwardsORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Local haplotype visualization for trait association analysis with crosshap

Jacob Ian Marsh, Jakob Petereit, Brady Johnston, Philipp E. Bayer, Cassandria G. Tay Fernandez, Hawlader Abdullah Al-Mamun, Jacqueline Batley, David Edwards

crosshap visualizes local haplotype structures and associations with traits using density-based clustering and visualization tools.

bioRxiv · May 7, 2023 · PreprintBioinformatics

DNABERT-based explainable lncRNA identification in plant genome assemblies

Monica F. Danilevicz, Mitchell Gill, Cassandria G. Tay Fernandez, Jakob Petereit, Shriprabha R. Upadhyaya, Jacqueline Batley, Mohammed Bennamoun, David Edwards, Philipp E. Bayer

This paper introduces a DNABERT-based NLP model to identify lncRNAs from genomic sequences across plant species, achieving accuracies between 57.9% and 83.4%.

Computational and Structural Biotechnology Journal · Jan 1, 2023Peer-reviewedBioinformatics

Wheat Panache - a pangenome graph database representing presence/absence variation across 16 bread wheat genomes

Philipp E. Bayer, Jakob Petereit, Éloi Durant, Cécile Monat, Mathieu Rouard, Haifei Hu, Brett Chapman, Chengdao Li, Shifeng Cheng, Jacqueline Batley, David Edwards

bioRxiv · Feb 23, 2022 · PreprintBioinformatics