Seth Just

This study evaluates how chromatographic sampling affects quantification and biological discovery in DIA proteomics, finding that statistical power and LOQ are more critical than identifications.

Radiant DIA is a fast and cost-effective search engine for proteomics that maintains accuracy and sensitivity, enabling efficient analysis of large-scale datasets.

The paper presents a scalable MBR algorithm for proteomics cohort analysis, enabling faster processing of large datasets with results comparable to existing methods.

The paper introduces nf-encyclopedia, a NextFlow pipeline for DIA proteomics analysis, showing it works well on cloud and local platforms and improves protein quantification with MSstats.