Author

D. G. Joakim Larsson

University of GothenburgORCID 0000-0002-5496-0328Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Organism:bacteria (other)· 2 Research Focus:host-pathogen & immune response· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:biophysical modeling· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Anna JohnningiD· 2 shared David LundiD· 2 shared Erik KristianssoniD· 2 shared Marcos Parras-MoltóiD· 2 shared Stefan EbmeyeriD· 2 shared Fanny BerglundiD· 1 shared Juan Salvador Inda-DíaziD· 1 shared Maria-Elisabeth Böhm· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersMicrobiology

Anna JohnningORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

The transfer of antibiotic resistance genes between evolutionary distant bacteria

Marcos Parras-Moltó, David Lund, Stefan Ebmeyer, D. G. Joakim Larsson, Anna Johnning, Erik Kristiansson

This study systematically analyzes antibiotic resistance gene transfers between evolutionary distant bacteria, identifying 661 inter-phyla transfers and highlighting differences in transfer frequency and mechanisms across ARG classes and phyla.

mSphere · Jun 3, 2025Peer-reviewedMicrobiology

Genetic compatibility and ecological connectivity drive the dissemination of antibiotic resistance genes

David Lund, Marcos Parras-Moltó, Juan Salvador Inda-Díaz, Stefan Ebmeyer, D. G. Joakim Larsson, Anna Johnning, Erik Kristiansson

Random forests using nucleotide-composition dissimilarity and metagenomic co-occurrence predict horizontal transfer of resistance genes between bacteria (general model AUROC 0.873); mismatch limits transfer, human and wastewater co-occurrence favors it.

Nature Communications · Mar 16, 2025Peer-reviewedMicrobiology✦ In-depth digest

Identification of Novel FosX Family Determinants from Diverse Environmental Samples

Nicolas Kieffer, Maria-Elisabeth Böhm, Fanny Berglund, Nachiket Prakash Marathe, Michael Richard Gillings, D. G. Joakim Larsson

This study identifies four novel fosfomycin resistance genes from environmental samples, which belong to the FosX family and show resistance to phosphonoformate inhibition.

Journal of Global Antimicrobial Resistance · Dec 24, 2024Peer-reviewedMicrobiology