Author

Juan Salvador Inda-Díaz

Chalmers University of TechnologyORCID 0000-0002-3735-8300Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 3 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:metagenomics· 4 Research Focus:benchmarking· 3 Approach:statistical model· 3 Organism:bacteria (other)· 2 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1

Frequent Co-Authors

Anna JohnningiD· 2 shared David LundiD· 2 shared Erik KristianssoniD· 2 shared Johan Bengtsson‐PalmeiD· 2 shared Luis Pedro CoelhoiD· 2 shared Yiqian DuaniD· 2 shared Alexandre Areias CastroiD· 1 shared Anna CuscóiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Anna JohnningORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

The elusive resistome: a global comparison reveals large discrepancies among detection pipelines

Juan Salvador Inda-Díaz, Faith Adegoke, Ulrike Löber, Víctor Hugo Jarquín‐Díaz, Yiqian Duan, Johan Bengtsson‐Palme, Svetlana Ugarcina Perovic, Luis Pedro Coelho

The paper compares ARG detection pipelines and finds large discrepancies in reported ARG counts and composition across different habitats.

bioRxiv · May 12, 2026 · PreprintBioinformatics

Long-read metagenomic sequencing reveals novel lineages and functional diversity in urban soil microbiome

Yiqian Duan, Anna Cuscó, Yaozhong Zhang, Juan Salvador Inda-Díaz, Chengkai Zhu, Alexandre Areias Castro, Xinrun Yang, Jiabao Yu, Gaofei Jiang, Xing-Ming Zhao, Luis Pedro Coelho

The paper uses long-read metagenomic sequencing to analyze urban soil samples, revealing novel microbial lineages and extensive functional diversity.

bioRxiv · Mar 21, 2026 · PreprintBioinformatics

Community-promoted antibiotic resistance genes show increased dissemination among pathogens

David Lund, Anna Johnning, Michaela Holmström, Laleh Varghaei, Juan Salvador Inda-Díaz, Johan Bengtsson‐Palme, Erik Kristiansson

The paper investigates how the prevalence of antibiotic resistance genes in human gut and wastewater microbiomes correlates with their dissemination among bacterial pathogens.

bioRxiv · May 12, 2025 · PreprintBioinformatics

Genetic compatibility and ecological connectivity drive the dissemination of antibiotic resistance genes

David Lund, Marcos Parras-Moltó, Juan Salvador Inda-Díaz, Stefan Ebmeyer, D. G. Joakim Larsson, Anna Johnning, Erik Kristiansson

Random forests using nucleotide-composition dissimilarity and metagenomic co-occurrence predict horizontal transfer of resistance genes between bacteria (general model AUROC 0.873); mismatch limits transfer, human and wastewater co-occurrence favors it.

Nature Communications · Mar 16, 2025Peer-reviewedMicrobiology✦ In-depth digest