Author

Daniel S. Fisher

Stanford UniversityORCID 0000-0002-5559-2491Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Evolutionary Biology· 1 Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:development & morphogenesis· 1 Organism:E. coli· 1 Approach:experimental assay· 1

Frequent Co-Authors

Alana PapulaiD· 2 shared Andrew L. YoungiD· 1 shared Caroline J. WatsoniD· 1 shared Christina L. HuescheniD· 1 shared Gabriel BîrzuiD· 1 shared Griffin ChureiD· 1 shared Hernán G. GarcíaiD· 1 shared Jamie R. BlundelliD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersEvolutionary Biology

Alana PapulaORCID

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3 papers

Recent·Most cited

Extensive recombination, selection, and asexual blooms shapethe diversity of the dominant clade of Prochlorococcus

Alana Papula, Gabriel Bîrzu, Daniel S. Fisher

This study analyzes single-cell genomes of Prochlorococcus HLII to show recombination connects the clade, genes evolve independently, and asexual blooms are eroded by recombination, with no stable ecotypes.

bioRxiv · Dec 29, 2025 · PreprintEvolutionary Biology

Fundamental limits on the rate of bacterial growth

Nathan M. Belliveau, Griffin Chure, Christina L. Hueschen, Hernán G. García, Jané Kondev, Daniel S. Fisher, Julie A. Theriot, Rob Phillips

The paper quantifies the relationship between bacterial growth rate, cell size, and protein content in E. coli using proteomic data, finding ribosome biogenesis as a primary determinant of growth rate.

bioRxiv · Oct 18, 2020 · PreprintSystems Biology

The Evolutionary Dynamics and Fitness Landscape of Clonal Haematopoiesis

Caroline J. Watson, Alana Papula, Yeuk P. G. Poon, Winghing Wong, Andrew L. Young, Todd E. Druley, Daniel S. Fisher, Jamie R. Blundell

The paper quantifies fitness advantages of pathogenic variants in clonal haematopoiesis using blood sequencing data from ~50,000 individuals.

bioRxiv · Mar 6, 2019 · PreprintGenomics