Author

Amrit Gaire

University of MinnesotaORCID 0000-0002-5655-9570Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Adam L. BurrackiD· 1 shared Constantin AliferisiD· 1 shared Eduardo Cruz-HinojozaiD· 1 shared Erich KummerfeldiD· 1 shared Ingunn M. StromnesiD· 1 shared Jinhua WangiD· 1 shared Madeline A. EllefsoniD· 1 shared Rachana PandeyiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperImmunology

Adam L. BurrackORCID

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2 papers

Recent·Most cited

ImmunologybioRxivPreprintAug 1, 2026

Tumor-specific CD4 T cells cooperate with myeloid cells to remodel the pancreatic tumor microenvironment and enable effective immunotherapy

Eduardo Cruz-Hinojoza, Zoe C. Schmiechen, Sindri M Bonner…·Ingunn M. Stromnes

The paper shows that tumor-specific CD4 T cells, when activated with MHC-II tetramers and anti-CD40, remodel the pancreatic tumor microenvironment to enhance immunotherapy.

DOI 10.64898/2026.07.28.741325

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJul 11, 2026

Locus-Level Transposable Element Profiling Resolves Division-Coupled Transcriptional Dynamics During Human Endoderm Specification

Amrit Gaire, Erich Kummerfeld, Constantin Aliferis, Jinhua Wang

The paper quantifies transposable element (TE) expression at both subfamily and locus levels during human endoderm differentiation, finding locus-level analysis reveals distinct transcriptional dynamics at cell division boundaries.

DOI 10.64898/2026.07.07.737093

humanbulk RNA-seq

𝕏 PostBluesky