Author

Kelsey L. Farenhem

Whitehead Institute for Biomedical ResearchORCID 0000-0002-5747-7999Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:differential expression· 1 Assay:long-read sequencing· 1 Assay:multiome· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1

Frequent Co-Authors

Ankur JainiD· 2 shared Alina Chouloute· 1 shared Cameron O. SchmitziD· 1 shared Michael R. Das· 1 shared Rachel AndersoniD· 1 shared Troy W. WhitfieldiD· 1 shared Yeonji ChangiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

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7 top collaborators · 13 mutual co-author links

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2 shared papersMolecular Biology

Ankur JainORCID

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2 papers

Recent·Most cited

Molecular BiologybioRxivPreprintJun 5, 2025

Transcriptome-wide RNA accessibility mapping reveals structured RNA elements and pervasive conformational rearrangements under stress

Kelsey L. Farenhem, Troy W. Whitfield, Alina Chouloute, Ankur Jain

This study introduces DMS-TRAM-seq to map RNA structure across the transcriptome, identifying structured elements and showing structural changes under stress.

DOI 10.1101/2025.06.05.658101

humanlong-read sequencing

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Molecular BiologyMolecular CellPeer-reviewedJan 30, 2024

CAG repeat expansions create splicing acceptor sites and produce aberrant repeat-containing RNAs

Rachel Anderson, Michael R. Das, Yeonji Chang…·Ankur Jain

This study identifies that CAG repeat expansions create new splice acceptor sites, leading to aberrant repeat-containing RNAs that are translated via canonical AUG-initiated mechanisms.

8 citations

humanmultiome

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