Espen S. Bækkevold

The paper presents the Human Gut Cell Atlas v1.0, a unified reference of gut cell diversity, revealing how tissue structure influences cellular composition and enabling disease and organoid analysis.

The paper identifies ultra long-lived plasma cells in the human small intestine that produce IgA antibodies reactive to a diverse microbiota, suggesting long-term immune memory shaping the microbiome.

Easydecon efficiently maps cell types to high-definition spatial transcriptomic data by combining hotspot detection and similarity-based refinement.

The paper uses single-cell spatial transcriptomics to identify coordinated cellular programs in MSS colorectal cancer that correlate with prognosis.

The paper integrates single-cell RNA-seq datasets across the GI tract to identify epithelial metaplasia in inflammatory diseases, showing its role in inflammation through immune cell interactions.

Cellsnake provides a user-friendly, reproducible workflow for scRNA-seq analysis, addressing installation and learning curve issues for non-expert users.