Author

David Requena

Rockefeller UniversityORCID 0000-0002-5968-1133Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:software / tool· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Alina Soto Obando· 1 shared Aman Sharma· 1 shared Armando Emiliano GonzaleziD· 1 shared Aswin NatarajaniD· 1 shared Beatrix M. UeberheideiD· 1 shared Carolina Colli CruziD· 1 shared Darren Taylor· 1 shared Dejan Stepec· 1 shared

Activity by Year

2022-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenetics

Alina Soto Obando

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintJan 22, 2025

✦ In-depth digest

A pan-cancer atlas of therapeutic T cell targets

Guangyuan Li, Omar U. Guzmán-Bringas, Aman Sharma…·Mark Yarmarkovich

ImmunoVerse integrates RNA-Seq and immunopeptidomes to catalog 28,446 tumor-specific HLA-presented antigens across 21 cancers, including a splicing-derived PMEL peptide with T cell expansion support.

5 citations

humanbulk RNA-seq

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BioinformaticsPLoS ONEPeer-reviewedAug 26, 2022

Epitope-Evaluator: an interactive web application to study predicted T-cell epitopes

Luis F. Soto, David Requena, Juan I. Fuxman Bass

Epitope-Evaluator is a web tool that allows users to interactively analyze and filter predicted T-cell epitopes from immunoinformatic tools.

10 citations

protein sequencestatistical model

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GeneticsbioRxivPreprintMar 10, 2022

Assembly and phylogeographic analysis of novel Taenia solium mitochondrial genomes reveal further differentiation between and within Asian and African-American genotypes

Gabriel Jiménez-Avalos, Alina Soto Obando, Maria Alma Solis…·the Cysticercosis Working Group in Peru

The paper assembles and analyzes mitochondrial genomes of Taenia solium from Latin America, identifying SNPs and phylogeographic patterns that suggest metabolic differences and historical spread of the parasite.

DOI 10.1101/2022.03.10.483888

humanstatistical model

𝕏 PostBluesky