Julien Tremblay

The paper examines how drought affects the total and active microbiome in wheat roots, finding greater sensitivity in the active microbiome and VOC emissions in drought-sensitive wheat.

The paper identifies genomic architectures associated with parasitism loss in lampreys, showing distinct genomic features across different ecotypes and highlighting independent evolutionary paths.

The paper shows that seed microbiota from drought-stressed wheat plants improve yield stability in subsequent generations under water stress.

This study identifies a SWI/SNF-targeting therapy effective against a double-negative prostate cancer subtype, showing it reduces viability in both AR-dependent and WNT-dependent models.

This study examines how drought stress impacts the wheat rhizosphere microbiome at different growth stages, finding stage-specific metatranscriptomic responses and altered microbial succession.

The paper examines coordinated transcriptional responses of plants and microbes to oil-sands process-affected water using metatranscriptomics.

The paper shows that adding DNA from water-stressed soils to wheat rhizosphere communities can reduce plant stress by transferring beneficial genes.

This study identifies a multispecies inoculum that enhances wheat growth under drought by directly promoting plant growth traits and indirectly altering root-associated microbial communities.

This study shows plant miRNAs affect soil bacterial amino acid consumption and community composition, with positive effects despite inhibiting uptake.

This study evaluates shallow shotgun metagenomic sequencing by subsampling public datasets, finding that low-depth sequencing yields similar ecological insights but high depth improves metagenome-assembled genome quality.

The paper evaluates metagenomic software tools using realistic datasets, highlighting improvements in assembly and taxon profiling while identifying remaining challenges in virus/archaea detection and reproducibility.

GenPipes provides a scalable framework for genomic analyses, offering pre-built pipelines and flexibility for custom workflows.