Eliseos J. Mucaki

The paper introduces Murmurent, an agentic AI environment that supports biomedical research collaboration by providing infrastructure, specialized agents, memory, traceability, SOP enforcement, and multi-user capacity.

The paper introduces PREFFECT, a probabilistic framework to improve analysis of FFPE-derived RNA-seq data by addressing transcript dropout and variance through generative models and graph attention mechanisms.

This study identifies genetic alterations associated with recurrence and radiotherapy response in ductal carcinoma in situ using whole-exome sequencing and copy number analysis.

This paper describes ADCI Online, a secure cloud-based platform for radiation dose estimation using dicentric chromosome assays, achieving results comparable to local systems in under 2 days.

The paper improves radiation exposure detection in blood by addressing confounding factors through enhanced gene signatures.

The paper confirms that genomic variants predicted to affect alternative mRNA splicing indeed alter splice site strength and exon inclusion, using RNAseq and q-RT-PCR in HapMap and tumor datasets.

The paper presents a validated pan-cancer repository of mRNA splicing mutations, identifying and characterizing over 350,000 mutations across multiple tumor types.