Author

Satoshi Hashimoto

Institute of Medical Science, The University of TokyoORCID 0000-0002-6445-1885Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:imputation· 1 Assay:metagenomics· 1

Frequent Co-Authors

Toshifumi InadaiD· 3 shared Chisato Kikuguchi· 1 shared Jennifer Sauerland· 1 shared Jiahuan Zeng· 1 shared Kenji KohnoiD· 1 shared Mari MitoiD· 1 shared Minoru YoshidaiD· 1 shared Peixun HaniD· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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3 shared papersMolecular Biology

Toshifumi InadaORCID

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3 papers

Recent·Most cited

RiboPipe: efficient per-transcript codon-resolution ribo-seq coverage imputation for low-coverage transcripts

Yaozhong Zhang, Satoshi Hashimoto, Sihan Li, Toshifumi Inada, Seiya Imoto

RiboPipe imputes codon-resolution Ribo-seq coverage for low-coverage transcripts using a unified framework that improves accuracy and efficiency.

bioRxiv · May 8, 2026 · PreprintBioinformatics

Parallel ZNF598 and GIGYF2 pathways mediate conserved collision-dependent mRNA decay with distinct endonucleolytic features

Satoshi Hashimoto, Jennifer Sauerland, Jiahuan Zeng, Chisato Kikuguchi, Toshifumi Inada

The paper shows that two pathways, ZNF598 and GIGYF2, mediate mRNA decay due to ribosome collisions in yeast and mammals, with distinct endonucleolytic features.

bioRxiv · Jan 2, 2026 · PreprintMolecular Biology

Genome-wide survey of ribosome collision

Peixun Han, Yuichi Shichino, Tilman Schneider‐Poetsch, Mari Mito, Satoshi Hashimoto, Tsuyoshi Udagawa, Kenji Kohno, Minoru Yoshida, Yuichiro Mishima, Toshifumi Inada, Shintaro Iwasaki

The paper identifies genome-wide ribosome collision sites in humans and zebrafish, revealing their sequence motifs and functional roles in protein synthesis.

Cell Reports · May 1, 2020Peer-reviewedMolecular Biology