Author

Donald R Franklin

University of California San DiegoORCID 0000-0002-6639-8686Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:metabolomics· 2 Research Focus:database / resource· 1 Approach:experimental assay· 1 Approach:statistical model· 1

Frequent Co-Authors

Abubaker PataniD· 2 shared Crystal X. WangiD· 2 shared David J. MooreiD· 2 shared Dionicio R. SiegeliD· 2 shared Helena Mannochio-RussoiD· 2 shared Ipsita MohantyiD· 2 shared Jasmine ZemliniD· 2 shared Jennifer E. IudicelloiD· 2 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Abubaker PatanORCID

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2 papers

Recent·Most cited

MS/MS Mass Spectrometry Filtering Tree for Bile Acid Isomer Annotation.

Ipsita Mohanty, Shipei Xing, Vanessa Castillo, Julius Agongo, Abubaker Patan, Yasin El Abiead, Helena Mannochio-Russo, Simone Zuffa, Jasmine Zemlin, Alexandre Tronel, Audrey Le Gouëllec, Thomas Soranzo, Crystal X. Wang, Jennifer E. Iudicello, Mohammad Sobhan Sheikh Andalibi, , Pieter C. Dorrestein

This paper introduces a mass spectrometry filtering tree to distinguish bile acid isomers in LC-MS/MS data and identifies a novel deoxycholyl-2-aminophenol amidate linked to whole grain consumption.

bioRxiv · Mar 4, 2025 · PreprintBioinformatics

The microbiome diversifies N-acyl lipid pools - including short-chain fatty acid-derived compounds

Helena Mannochio-Russo, Vincent Charron‐Lamoureux, Martijn H. J. R. van Faassen, Santosh Lamichhane, Wilhan Donizete Gonçalves Nunes, Victoria Deleray, Abubaker Patan, Kyle Vittali, Prajit Rajkumar, Yasin El Abiead, Haoqi Nina Zhao, Paulo Wender Portal Gomes, Ipsita Mohanty, Carlynda Lee, Aidan Sund, , Pieter C. Dorrestein

The paper creates a spectral library of N-acyl lipids from metabolomics data, identifies novel compounds, and links them to health conditions like HIV and cognitive impairment.

bioRxiv · Oct 31, 2024 · PreprintBioinformatics