Author

Olli‐Pekka Smolander

Tallinn University of TechnologyORCID 0000-0002-6795-7734Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:experimental assay· 2 Assay:imaging· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1 Organism:E. coli· 1

Frequent Co-Authors

Immanuel SankaiD· 2 shared Ott ScheleriD· 2 shared Petri AuvineniD· 2 shared Pille PataiD· 2 shared Simona BartkovaiD· 2 shared Aapo KahilaineniD· 1 shared Abhilash NairiD· 1 shared Abhishekh GuptaiD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Immanuel SankaORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

User-friendly analysis of droplet array images

Immanuel Sanka, Simona Bartkova, Pille Pata, Mart Ernits, Monika Merje Meinberg, Natali Agu, Villem Aruoja, Olli‐Pekka Smolander, Ott Scheler

The paper introduces user-friendly analytical pipelines for droplet array analysis using open-source tools and a custom visualization tool.

Analytica Chimica Acta · Jun 4, 2023Peer-reviewedBioinformatics

The transcription factor network of E. coli steers global responses to shifts in RNAP concentration

Bilena L.B. Almeida, Mohamed N. M. Bahrudeen, Vatsala Chauhan, Suchintak Dash, Vinodh K. Kandavalli, Antti Häkkinen, Jason Lloyd‐Price, Cristina S.D. Palma, Ines S. C. Baptista, Abhishekh Gupta, Juha Kesseli, Éric Dufour, Olli‐Pekka Smolander, Matti Nykter, Petri Auvinen, , Andre Sanches Ribeiro

The paper examines how changes in RNA polymerase concentration affect gene expression in E. coli, finding that mid-term responses correlate with transcription factor network topology.

bioRxiv · Mar 7, 2022 · PreprintSystems Biology

Investigation of Different Free Image Analysis Software for High-Throughput Droplet Detection

Immanuel Sanka, Simona Bartkova, Pille Pata, Olli‐Pekka Smolander, Ott Scheler

This paper evaluates four free image analysis software for droplet detection, finding that objective-type software is more suitable for non-experienced users, with CellProfiler offering the best user experience.

ACS Omega · Aug 26, 2021Peer-reviewedBioinformatics

Improved chromosome level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) based on SMRT Sequencing and linkage map.

Daniel Blande, Olli‐Pekka Smolander, Virpi Ahola, Pasi M. A. Rastas, Jaakko Tanskanen, Juhana Kammonen, Vicencio Oostra, Lorenzo Pellegrini, Suvi Ikonen, Tad Dallas, Michelle F. DiLeo, Anne Duplouy, Ilhan Cem Duru, Pauliina Halimaa, Aapo Kahilainen, , Marjo Saastamoinen

The paper improves the chromosome-level genome assembly of the Glanville fritillary butterfly using SMRT sequencing and a linkage map, increasing the assembly size by 94 Mb.

bioRxiv · Nov 3, 2020 · PreprintGenomics