Author

Aki Masunaga

Okinawa Institute of Science and Technology Graduate UniversityORCID 0000-0002-6913-8417Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 4

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Approach:experimental assay· 2 Research Focus:genome assembly· 2 Organism:non-human primate· 2 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Charles PlessyiD· 4 shared Nicholas M. LuscombeiD· 4 shared Michael J. MansfieldiD· 3 shared Yongkai TaniD· 3 shared Aleksandra BlizninaiD· 2 shared Andrew W. LiuiD· 2 shared Charlotte WestiD· 2 shared Jiashun MiaoiD· 2 shared

Activity by Year

2021-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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4 shared papersGenomics

Charles PlessyORCID

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4 papers

Recent·Most cited

GenomicsF1000ResearchPeer-reviewedNov 12, 2024

The complete mitogenome of an unidentified Oikopleura species

Johannes Nicolaus Wibisana, Charles Plessy, Nicolas Dierckxsens…·Nicholas M. Luscombe

The paper reports the complete mitochondrial genome of an unidentified Oikopleura species, providing a new resource for ecological and mitochondrial studies of appendicularians.

DOI 10.12688/f1000research.157311.1

database / resource

GenomicsGenome Biology and EvolutionPeer-reviewedAug 16, 2024

Tracing Homopolymers in Oikopleura dioica's mitogenome

Nicolas Dierckxsens, Kosei Watanabe, Yongkai Tan…·Charles Plessy

This study reports the first complete mitogenome assembly of Oikopleura dioica, revealing a high proportion of A and T homopolymers.

6 citations

whole-genome sequencingexperimental assay

GenomicsGenome ResearchPeer-reviewedApr 15, 2024

Extreme genome scrambling in cryptic Oikopleura dioica species

Charles Plessy, Michael J. Mansfield, Aleksandra Bliznina…·Nicholas M. Luscombe

The paper shows extreme genome scrambling in cryptic Oikopleura dioica species, revealing high rates of gene order rearrangements and insights into synteny conservation mechanisms.

3 citations

non-human primatewhole-genome sequencing

GenomicsBMC GenomicsPeer-reviewedMar 29, 2021

Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing

Aleksandra Bliznina, Aki Masunaga, Michael J. Mansfield…·Nicholas M. Luscombe

The paper presents a chromosome-scale genome assembly of Oikopleura dioica using Nanopore, Illumina, and Hi-C data, revealing chromosomal structure and genomic features.

33 citations

non-human primatewhole-genome sequencing