Author

Yongkai Tan

Okinawa Institute of Science and Technology Graduate UniversityORCID 0000-0002-1413-3424Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 4

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:genome assembly· 2 Organism:non-human primate· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Nicholas M. LuscombeiD· 4 shared Aki MasunagaiD· 3 shared Charles PlessyiD· 3 shared Michael J. MansfieldiD· 3 shared Aleksandra BlizninaiD· 2 shared Andrew W. LiuiD· 2 shared Charlotte WestiD· 2 shared Alfonso Ferrández‐RoldániD· 1 shared

Activity by Year

2021-2024 · peak 2/yr

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10 top collaborators · 31 mutual co-author links

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4 shared papersGenomics

Nicholas M. LuscombeORCID

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4 papers

Recent·Most cited

GenomicsGenome Biology and EvolutionPeer-reviewedAug 16, 2024

Tracing Homopolymers in Oikopleura dioica's mitogenome

Nicolas Dierckxsens, Kosei Watanabe, Yongkai Tan…·Charles Plessy

This study reports the first complete mitogenome assembly of Oikopleura dioica, revealing a high proportion of A and T homopolymers.

6 citations

whole-genome sequencingexperimental assay

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GenomicsGenome ResearchPeer-reviewedApr 15, 2024

Extreme genome scrambling in cryptic Oikopleura dioica species

Charles Plessy, Michael J. Mansfield, Aleksandra Bliznina…·Nicholas M. Luscombe

The paper shows extreme genome scrambling in cryptic Oikopleura dioica species, revealing high rates of gene order rearrangements and insights into synteny conservation mechanisms.

3 citations

non-human primatewhole-genome sequencing

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GenomicsNaturePeer-reviewedJan 25, 2023

Annelid functional genomics reveal the origins of bilaterian life cycles

Francisco M. Martín-Zamora, Yan Liang, Kero Guynes…·José María Martín-Durán

The paper shows that temporal shifts in trunk formation underpin larval diversification in annelids and bilaterian life cycles through comparative genomic and transcriptomic analysis.

115 citationstop 1%

bulk RNA-seqstatistical model

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GenomicsBMC GenomicsPeer-reviewedMar 29, 2021

Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing

Aleksandra Bliznina, Aki Masunaga, Michael J. Mansfield…·Nicholas M. Luscombe

The paper presents a chromosome-scale genome assembly of Oikopleura dioica using Nanopore, Illumina, and Hi-C data, revealing chromosomal structure and genomic features.

33 citations

non-human primatewhole-genome sequencing

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