Author

Allison E. Daly

University of California, Los AngelesORCID 0000-0002-7030-8663Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Assay:CUT&Tag· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Stephen T. SmaleiD· 2 shared Alexander HoffmanniD· 1 shared Allison Schiffman· 1 shared An‐Chieh FengiD· 1 shared Chia-Ho LiniD· 1 shared Douglas L. BlackiD· 1 shared Ha VuiD· 1 shared Jason ErnstiD· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Stephen T. SmaleORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Examining NFκB Genomic Interactions by ChIP-seq and CUT&Tag

Allison E. Daly, Allison Schiffman, Alexander Hoffmann, Stephen T. Smale

This study compares ChIP-seq and CUT&Tag for NFκB transcription factor genomic interactions, showing how experimental conditions affect detected interactions and their functional relevance.

bioRxiv · Aug 11, 2024 · PreprintGenomics

Alternative splicing of a chromatin modifier alters the transcriptional regulatory programs of stem cell maintenance and neuronal differentiation

Mohammad Nazim, Chia-Ho Lin, An‐Chieh Feng, Wen Xiao, Kyu‐Hyeon Yeom, Mulin Li, Allison E. Daly, Xianglong Tan, Ha Vu, Jason Ernst, Michael Carey, Stephen T. Smale, Douglas L. Black

The paper shows that alternative splicing of DPF2, regulated by PTBP1, affects chromatin organization and transcriptional regulation during stem cell maintenance and neuronal differentiation.

Cell stem cell · May 1, 2024Peer-reviewedMolecular Biology