Author

Ido Machol

Baylor College of MedicineORCID 0000-0001-9042-2765Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:Hi-C· 2 Organism:human· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Erez Lieberman AideniD· 3 shared Muhammad S. ShamimiD· 3 shared Neva C. DurandiD· 2 shared Atsede Siba· 1 shared Aviv RegeviD· 1 shared Aviva Presser AideniD· 1 shared Christine S. ChengiD· 1 shared Christophe O. BenoistiD· 1 shared

Activity by Year

2017-2018 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersGenomics

Erez Lieberman AidenORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium subterraneum

Olga Dudchenko, Melanie Pham, Christopher G. Lui, Sanjit Singh Batra, Marie Hoeger, Sarah K. Nyquist, Neva C. Durand, Muhammad S. Shamim, Ido Machol, W. Erskine, Erez Lieberman Aiden, Parwinder Kaur

The paper uses Hi-C data to improve the genome assembly of Trifolium subterraneum, resulting in chromosome-length scaffolds covering 95% of the genome.

bioRxiv · Nov 20, 2018 · PreprintGenomics

Genetic determinants of co-accessible chromatin regions in T cell activation across humans

Rachel E. Gate, Christine S. Cheng, Aviva Presser Aiden, Atsede Siba, Marcin Tabaka, Dmytro Lituiev, Ido Machol, M. Grace Gordon, Meena Subramaniam, Muhammad S. Shamim, Kendrick L. Hougen, Ivo A. Wortman, Su‐Chen Huang, Neva C. Durand, Ting Feng, , Aviv Regev

The paper identifies genetic variants affecting chromatin accessibility in T cells and links them to gene expression and autoimmune disease.

Nature Genetics · Jul 6, 2018Peer-reviewedGenomics

Static And Dynamic DNA Loops Form AP-1 Bound Activation Hubs During Macrophage Development

Douglas H. Phanstiel, Kevin Van Bortle, Damek V. Spacek, Gaelen T. Hess, Muhammad S. Shamim, Ido Machol, Michael I. Love, Erez Lieberman Aiden, Michael Cory Bassik, Michael P. Snyder

The paper identifies multi-loop activation hubs during macrophage development using Hi-C data, showing they are enriched for AP-1 binding and driven by cell-type specific transcription factors.

Molecular Cell · Sep 1, 2017Peer-reviewedGenomics