Author

Anabel Rodríguez

University of Notre DameORCID 0000-0002-7242-596XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Approach:statistical model· 1 Organism:yeast· 1

Frequent Co-Authors

Gabriel S. WrightiD· 2 shared Jun LiiD· 2 shared Patricia L. ClarkiD· 2 shared Scott EmrichiD· 2 shared Tijana MilenkovićiD· 2 shared Matthew M. ChampioniD· 1 shared McKenze J. MossiD· 1 shared Paul W. HuberiD· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 36 mutual co-author links

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2 shared papersMolecular Biology

Gabriel S. WrightORCID

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2 papers

Recent·Most cited

Synonymous codon substitutions regulate transcription and translation of an upstream gene

Anabel Rodríguez, Gabriel S. Wright, Taylor J. Lundgren, McKenze J. Moss, Jun Li, Tijana Milenković, Paul W. Huber, Matthew M. Champion, Scott Emrich, Patricia L. Clark

The paper shows that synonymous codon substitutions in E. coli can upregulate an upstream gene through cryptic transcription, challenging the view that synonymous mutations have no phenotypic effects.

bioRxiv · Aug 5, 2022 · PreprintMolecular Biology

Analysis of computational codon usage models and their association with translationally slow codons

Gabriel S. Wright, Anabel Rodríguez, Jun Li, Patricia L. Clark, Tijana Milenković, Scott Emrich

The paper evaluates five computational codon usage models for their ability to predict translational slowdowns using ribosome footprint data from S. cerevisiae, finding strong associations but also highlighting inconsistencies in RFP data.

PLoS ONE · Apr 30, 2020Peer-reviewedBioinformatics