Author

Michail Kotsyfakis

Czech Academy of SciencesORCID 0000-0002-7526-1876Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Assay:metagenomics· 1

Frequent Co-Authors

Michael HackenbergiD· 3 shared José María MedinaiD· 2 shared A Rueda· 1 shared Alexandra Cerqueira de AraujoiD· 1 shared Anthony BretaudeauiD· 1 shared Aya Zamoto‐NiikuraiD· 1 shared Bastian FrommiD· 1 shared Benjamin IstaceiD· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersSystems Biology

Michael HackenbergORCID

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3 papers

Recent·Most cited

An integrative framework identifies cooperative targeting of host pathways by tick salivary miRNAs

José María Medina, Guillermo Barturen, Michail Kotsyfakis, Michael Hackenberg

The paper identifies conserved miRNA-mRNA interactions in ticks that cooperatively target host genes involved in immune and tissue responses.

Computational and Structural Biotechnology Journal · Mar 1, 2026Peer-reviewedSystems Biology

Genome sequences of four Ixodes species expands understanding of tick evolution

Alexandra Cerqueira de Araujo, Benjamin Noël, Anthony Bretaudeau, Karine Labadie, Matéo Boudet, Nachida Tadrent, Benjamin Istace, Salima Kritli, Corinne Cruaud, Robert Olaso, Jean‐François Deleuze, Maarten Jeroen Voordouw, Caroline Hervet, Olivier Plantard, Aya Zamoto‐Niikura, , Claude Rispe

The paper presents genome sequences of four Ixodes species, revealing gene family amplifications and evolutionary patterns in ticks.

bioRxiv · Feb 29, 2024 · PreprintGenomics

miRNAgFree: prediction and profiling of novel microRNAs without genome assembly

EL Aparicio, A Rueda, Bastian Fromm, Cristina Gómez‐Martín, Ricardo Lebrón, José Luis Tejera Oliver, Juan Antonio Marchal, Michail Kotsyfakis, Michael Hackenberg

miRNAgFree predicts and profiles novel microRNAs without genome assembly by leveraging biogenesis features, achieving high accuracy in well-annotated species.

bioRxiv · Sep 23, 2017 · PreprintBioinformatics