Author

José María Medina

Universidad de GranadaORCID 0000-0002-8977-0663Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:genome assembly· 1 Assay:metagenomics· 1

Frequent Co-Authors

Michael HackenbergiD· 3 shared Michail KotsyfakisiD· 2 shared Alexandra Cerqueira de AraujoiD· 1 shared Anthony BretaudeauiD· 1 shared Aya Zamoto‐NiikuraiD· 1 shared Benjamin IstaceiD· 1 shared Benjamin NoëliD· 1 shared Caroline HervetiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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3 shared papersGenomics

Michael HackenbergORCID

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3 papers

Recent·Most cited

An integrative framework identifies cooperative targeting of host pathways by tick salivary miRNAs

José María Medina, Guillermo Barturen, Michail Kotsyfakis, Michael Hackenberg

The paper identifies conserved miRNA-mRNA interactions in ticks that cooperatively target host genes involved in immune and tissue responses.

Computational and Structural Biotechnology Journal · Mar 1, 2026Peer-reviewedSystems Biology

Genome sequences of four Ixodes species expands understanding of tick evolution

Alexandra Cerqueira de Araujo, Benjamin Noël, Anthony Bretaudeau, Karine Labadie, Matéo Boudet, Nachida Tadrent, Benjamin Istace, Salima Kritli, Corinne Cruaud, Robert Olaso, Jean‐François Deleuze, Maarten Jeroen Voordouw, Caroline Hervet, Olivier Plantard, Aya Zamoto‐Niikura, , Claude Rispe

The paper presents genome sequences of four Ixodes species, revealing gene family amplifications and evolutionary patterns in ticks.

bioRxiv · Feb 29, 2024 · PreprintGenomics

Unbiased and UMI-informed sequencing of cell-free miRNAs at single-nucleotide resolution

Monique A.J. van Eijndhoven, Ernesto Aparicio‐Puerta, Cristina Gómez‐Martín, José M. Medina, Esther E.E. Drees, E.J. Bradley, Leontien Bosch, Chantal Scheepbouwer, Michael Hackenberg, Dirk Michiel Pegtel

The paper introduces IsoSeek, a method for unbiased and UMI-informed sequencing of cell-free miRNAs, revealing extensive uridylation of disease-associated miRNAs and improving isomiR detection in extracellular vesicles.

bioRxiv · May 4, 2021 · PreprintGenomics