Khooshbu Kantibhai Patel

A platform-agnostic evaluation of non-formalin fixed single cell RNA technologies

The paper evaluates four non-formalin fixed scRNA-seq assays across multiple metrics to identify their strengths and limitations for different experimental goals.

Cerebellum metastasis model of HER2-positive breast cancer unveils key role of IL34-induced Arg1+ macrophages.

This paper develops a mouse model of HER2-positive breast cancer cerebellar metastases and identifies IL34-induced Arg1+ macrophages as key drivers of tumor growth, showing that targeting CSF1R can reduce metastases.

The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus

This study assesses metadata completeness in public omics studies, finding that most important phenotypes are often omitted, with only 11.5% of studies fully sharing all phenotypes.