Author

Vaibhav Jain

Duke UniversityORCID 0000-0002-8505-9778Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:cell-cell communication· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

Karen AbramsoniD· 2 shared Simon G. GregoryiD· 2 shared Amy ChadburniD· 1 shared Antoni Andreu MartijaiD· 1 shared Aparna BhaduriiD· 1 shared Ashley Perkins BarryiD· 1 shared Avinash Veerappa· 1 shared Benjamin DeneeniD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersGenomics

Karen AbramsonORCID

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Author profile →

3 papers

Recent·Most cited

A platform-agnostic evaluation of non-formalin fixed single cell RNA technologies

Ellora Haukenfrers, Vaibhav Jain, Stephanie Arvai, Khooshbu Patel, Simon G. Gregory, Karen Abramson, Devjanee Swain Lenz

The paper evaluates four non-formalin fixed scRNA-seq assays across multiple metrics to identify their strengths and limitations for different experimental goals.

bioRxiv · Jan 28, 2026 · PreprintGenomics

HIV-associated non-Hodgkin lymphoma tumor-microenvironment axes differ by EBV status across cellular origins

Amy Chadburn, Montserrat Aguilar-Hernández, Joanne Dai, Mitra Harrison, Nicolás M. Reinoso-Vizcaíno, Ashley Perkins Barry, Emily Hocke, Karen Abramson, Vaibhav Jain, Cliburn C. W. Chan, Ethel Cesarman, Micah A. Luftig, Elliott Daniel SoRelle

This study uses spatial transcriptomics to show that EBV+ HIV-associated NHLs have distinct tumor microenvironment features, including immunosuppressive pathways and spatial organization similar to lymphoid tissues.

bioRxiv · Oct 15, 2025 · PreprintCancer Biology

A neurovascular progenitor sits at the nexus of glioblastoma lineage trajectories

Elisa Fazzari, Daria J. Azizad, Kwanha Yu, Weihong Ge, Matthew X. Li, Patricia R. Nano, Shivani Baisiwala, Antoni Andreu Martija, Ryan L. Kan, Jaela Caston, Loukas N. Diafos, Hong A. Tum, Christopher Tse, Nicholas A. Bayley, Vjola Haka, , Aparna Bhaduri

This study identifies a neurovascular progenitor cell type in glioblastoma that links distinct malignant lineages and influences tumor composition and survival.

bioRxiv · Jul 24, 2024 · PreprintCancer Biology