Author

Syed Ashiqur Rahman

University of PittsburghORCID 0000-0002-8201-4195Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Immunology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:human· 2 Assay:proteomics· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Jishnu DasiD· 3 shared Alex BoshartiD· 1 shared Alisa A. OmelchenkoiD· 1 shared Alyson WangiD· 1 shared Amanda C. PoholekiD· 1 shared Ana KonvalinkaiD· 1 shared Andrea Božović· 1 shared Andrzej J. ChruscinskiiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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3 shared papersImmunology

Jishnu DasORCID

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3 papers

Recent·Most cited

ImmunologyNature CommunicationsPeer-reviewedJul 22, 2026

A unified network systems approach uncovers a core novel program underlying T follicular helper cell differentiation

Alisa A. Omelchenko, Syed Ashiqur Rahman, Alyson Wang…·Jishnu Das

This study identifies a core gene program underlying Tfh cell differentiation using a multi-scale network systems approach, revealing a novel role for IL-12 in regulating Tfh precursor differentiation.

DOI 10.1038/s41467-026-75559-8

humanmouse

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BioinformaticsPLoS Computational BiologyPeer-reviewedJun 10, 2024

Mutability Patterns Across the Spike Glycoprotein Reveal the Diverging and Lineage-specific Evolutionary Space of SARS-CoV-2.

Roberth Anthony Rojas Chávez, Mohammad Fili, Changze Han…·Hillel Haim

The paper identifies lineage-specific mutability patterns in SARS-CoV-2 spike protein to predict future mutations and guide vaccine/therapeutic design.

1 citation

virusproteomics

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Molecular BiologyJournal of the American Society of NephrologyPeer-reviewedSep 8, 2020

Proteomics Reveals Extracellular Matrix Injury in the Glomeruli and Tubulointerstitium of Kidney Allografts with Early Antibody-Mediated Rejection

Sergi Clotet‐Freixas, Caitríona M. McEvoy, Ihor Batruch…·Ana Konvalinka

The paper uses proteomics to identify ECM injury in kidney allografts with early AMR, finding decreased ECM proteins and increased LGALS1 and GSTO1 in affected tissues.

47 citationstop 2%

humanproteomics

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