Author

Prashant Bharadwaj Kalvapalle

Rice UniversityORCID 0000-0002-8255-3623Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Lauren B. StadleriD· 3 shared Jonathan J. SilbergiD· 2 shared August O. StaubusiD· 1 shared Bryce L. KilleiD· 1 shared Eddie KimiD· 1 shared Esther G. LouiD· 1 shared James ChappelliD· 1 shared Kiara Reyes GamasiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersSynthetic Biology

Lauren B. StadlerORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Information storage across a microbial community using universal RNA memory

Prashant Bharadwaj Kalvapalle, August O. Staubus, Matthew J. Dysart, Lauren Gambill, Kiara Reyes Gamas, Li Chieh Lu, Jonathan J. Silberg, Lauren B. Stadler, James Chappell

The paper uses synthetic RNA to store and detect information in microbial communities through rRNA sequencing, revealing differences in information storage across variants.

Nature Biotechnology · Mar 18, 2025Peer-reviewedSynthetic Biology

Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens

Michael Wang, Esther G. Lou, Nicolae Sapoval, Eddie Kim, Prashant Bharadwaj Kalvapalle, Bryce L. Kille, Ryan A. Leo Elworth, Yunxi Liu, Yilei Fu, Lauren B. Stadler, Todd J. Treangen

Olivar automates variant-aware primer design for tiled amplicon sequencing of pathogens, improving mapping rates and coverage compared to existing methods.

Nature Communications · Jul 26, 2024Peer-reviewedBioinformatics

Long duration environmental biosensing by recording analyte detection in DNA using recombinase memory

Prashant Bharadwaj Kalvapalle, Swetha Sridhar, Jonathan J. Silberg, Lauren B. Stadler

This paper develops recombinase-memory biosensors to record analyte detection in DNA over long durations, demonstrating their use in wastewater isolates.

Applied and Environmental Microbiology · Mar 29, 2024Peer-reviewedSynthetic Biology