Qingyao Daniel Huang

PathwayPilot: A User-Friendly Tool for Visualizing and Navigating Metabolic Pathways

PathwayPilot is a web tool for visualizing and comparing metabolic pathways using metaproteomic data, demonstrating its effectiveness in analyzing enzyme expression shifts in gut microbiota under caloric restriction.

PaxDB 5.0: curated protein quantification data suggests adaptive proteome changes

PaxDB 5.0 provides updated protein abundance data across species, highlighting expanded coverage and comparative analysis with existing resources.

Enabling population assignment from cancer genomes with SNP2pop

The paper develops a tool for population assignment from cancer genomes and validates its accuracy across healthy and mutated samples.

Geographic assessment of cancer genome profiling studies

This study assesses geographic information in cancer genome profiling publications to identify gaps in representation and highlight inequalities in cancer research geographies.

Identifying gene function and module connections by the integration of multi-species expression compendia

The paper introduces GeneBridge, a method for imputing gene function and predicting module connections using multi-species expression data, and demonstrates its application across 1,700 datasets.

segment_liftover: a Python tool to convert segments between genome assemblies

segment_liftover converts genome segments between assemblies while preserving continuity, enabling accurate analysis of structural variations.