Author

Anne Marie Singh

University of Wisconsin SystemORCID 0000-0002-8308-8145Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Lindsay KalaniD· 2 shared Mary Hannah SwaneyiD· 2 shared Anastasia Tackett· 1 shared Cameron R. CurrieiD· 1 shared Casper G. BendixseniD· 1 shared Christine M. SeroogyiD· 1 shared Gretchen Spicer· 1 shared Irene M. OngiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersMicrobiology

Lindsay KalanORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Farm exposure is associated with human breast milk immune profile and microbiome

Mary Hannah Swaney, Olivia Steidl, Anastasia Tackett, Samantha Fye, Kristine E. Lee, Irene M. Ong, Casper G. Bendixsen, Gretchen Spicer, James Deline, James E. Gern, John Lucey, Christine M. Seroogy, Lindsay Kalan, Anne Marie Singh

The paper compares immune profiles and microbiomes of breast milk from mothers with different farm exposures to identify associations with immune development and atopic disease.

iScience · Nov 1, 2026Peer-reviewedMicrobiology

Evolutionary investigations of the biosynthetic diversity in the skin microbiome using lsaBGC

Rauf Salamzade, J.Z. Alex Cheong, Shelby Sandstrom, Mary Hannah Swaney, Reed M. Stubbendieck, Nicole Lane Starr, Cameron R. Currie, Anne Marie Singh, Lindsay Kalan

The paper introduces lsaBGC, a bioinformatics tool for analyzing BGCs in skin microbiomes, revealing evolutionary patterns and novel SNVs in key species.

Microbial Genomics · Apr 28, 2023Peer-reviewedBioinformatics