Author

Reed M. Stubbendieck

Oklahoma State UniversityORCID 0000-0003-1507-3272Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Assay:metagenomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Mercedes Pérez Pérez· 2 shared Niladri Bhowmik· 2 shared Sydney M. Morabbi· 2 shared Akram Al Daerwish· 1 shared Anne Marie SinghiD· 1 shared Benjamin J. PhilmusiD· 1 shared Cameron R. CurrieiD· 1 shared Elizabeth Pascual· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

Mercedes Pérez Pérez

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

MicrobiologybioRxivPreprintOct 31, 2026

Siderophore-Mediated Competition Between Cystic Fibrosis Pathogens Increases Virulence Factor Production

Niladri Bhowmik, Laura Rodriguez-Velandia, Mercedes Pérez Pérez…·Reed M. Stubbendieck

This study shows Achromobacter spp. enhance Pseudomonas aeruginosa virulence by inducing siderophore production through iron competition in CF airways.

DOI 10.64898/2026.10.23.761465

humanbulk RNA-seq

𝕏 PostBluesky

MicrobiologybioRxivPreprintJul 17, 2026

Differential Metabolite Production Underlies Disruption of the Cystic Fibrosis Airway Microbiota by Pathogens

Sydney M. Morabbi, Niladri Bhowmik, Shaz Sutherland…·Reed M. Stubbendieck

This study identifies differential metabolite production by pathogens as a mechanism disrupting the CF airway microbiota, showing that pathogens inhibit oropharyngeal bacteria and reduce microbiota diversity.

DOI 10.64898/2026.07.16.738945

humanmetagenomics

𝕏 PostBluesky

BioinformaticsMicrobial GenomicsPeer-reviewedApr 28, 2023

Evolutionary investigations of the biosynthetic diversity in the skin microbiome using lsaBGC

Rauf Salamzade, J.Z. Alex Cheong, Shelby Sandstrom…·Lindsay Kalan

The paper introduces lsaBGC, a bioinformatics tool for analyzing BGCs in skin microbiomes, revealing evolutionary patterns and novel SNVs in key species.

33 citationstop 3%

humanmetagenomics

𝕏 PostBluesky