Author

Sakshi Shah

QB3ORCID 0000-0002-8378-7253Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Iain C. ClarkiD· 2 shared Adam R. AbateiD· 1 shared Atsuki KawamuraiD· 1 shared Benjamin DemareeiD· 1 shared Chenchen Xia· 1 shared Cyrille L. DelleyiD· 1 shared Eli BoritziD· 1 shared Kevin M. JosliniD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioengineering

Iain C. ClarkORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Single-cell DNA cytometry with magnetic- and fluorescence-activated bead sorting

Seung Won Shin, Sakshi Shah, Chenchen Xia, Atsuki Kawamura, Zhihui Wang, Yuanrong Kang, Nicole Klatt, Iain C. Clark

The paper introduces magniFIND-seq, a method for single-cell DNA and RNA analysis using digital PCR and commercial sorting instruments, enabling high-purity isolation of rare cell populations.

bioRxiv · Sep 18, 2026 · PreprintBioengineering

The Immunophenotype and Proviral Landscape of HIV-infected CD4 T Cells During Antiretroviral Therapy

Cyrille L. Delley, Sakshi Shah, Kevin M. Joslin, Yujung P. Park, Benjamin Demaree, Michael Paul Busch, Mars Stone, Steven G. Deeks, Eli Boritz, Adam R. Abate, Iain C. Clark

This study uses DAb-seq to analyze HIV-infected CD4 T cells on ART, revealing subset-specific differences in provirus maintenance and surface protein expression.

Proceedings of the National Academy of Sciences · Aug 18, 2026Peer-reviewedGenomics