Arindam Ghosh

The paper uses long-read sequencing to analyze genomic and epigenomic changes in melanoma subclones, revealing parallel evolutionary paths and lineage-specific methylation patterns.

This paper introduces a network-based method to estimate therapeutic efficacy and adverse reaction potential of anti-cancer drug combinations using gene set enrichment analysis and network propagation.

The paper reconstructs the mRNA-lncRNA-miRNA interaction network in human pluripotency, identifies an alternative circuit without NANOG, SOX2, and POU5F1, and discovers DANT1 as a key ceRNA.

The paper identifies molecular markers and transcriptional circuits defining naive and primed human pluripotency states using weighted gene co-expression network analysis.