Author

Giacomo Cinnirella

Weizmann Institute of ScienceORCID 0000-0002-8997-9109Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:machine learning (classical)· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Nir YosefiD· 2 shared Artemii Bakulin· 1 shared Boaz NadleriD· 1 shared Can ErgeniD· 1 shared Felipe PrósperiD· 1 shared Florian IngelfingeriD· 1 shared Idoia OchoaiD· 1 shared Juan R. Rodríguez-MadoziD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Nir YosefORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

An open CAR-T single-cell atlas to enable in-depth characterization and rational engineering of CAR-T products

Sergio Camara-Peña, Paula Rodríguez-Márquez, Núria Planell, María Eréndira Calleja-Cervantes, Lorea Jordana-Urriza, Giacomo Cinnirella, Shlomit Reich-Zeliger, Paula Rodríguez‐Otero, Luis‐Esteban Tamariz‐Amador, Idoia Ochoa, Nir Yosef, Juan R. Rodríguez-Madoz, Felipe Prósper, Mikel Hernáez

The paper constructs a CAR-T cell functional atlas from over one million cells across 13 studies to link product composition with clinical response and identify sex- and age-dependent effects.

bioRxiv · Oct 11, 2025 · PreprintBioinformatics

scVIVA: a probabilistic framework for representation of cells and their environments in spatial transcriptomics

Nathan Levy, Florian Ingelfinger, Artemii Bakulin, Giacomo Cinnirella, Pierre Boyeau, Boaz Nadler, Can Ergen, Nir Yosef

scVIVA is a deep generative model that integrates cell-intrinsic and neighboring gene expression to produce embeddings and gene profiles, revealing spatially restricted tumor-promoting endothelial cells and niche-associated T cell states in breast cancer.

bioRxiv · Jun 1, 2025 · PreprintBioinformatics