Author

Emad Alamoudi

University of BonnORCID 0000-0002-9129-4635Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Approach:Bayesian inference· 1 Research Focus:cell signaling & trafficking· 1 Approach:deep learning· 1 Assay:imaging· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Jan HasenaueriD· 3 shared Yannik SchälteiD· 2 shared Eva KiermaieriD· 1 shared Frederik GrawiD· 1 shared Jack MerriniD· 1 shared Jonas ArrudaiD· 1 shared Jörn StarrußiD· 1 shared Lutz BruschiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersSystems Biology

Jan HasenauerORCID

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3 papers

Recent·Most cited

Simulation-Based Inference of Cell Migration Dynamics in Complex Spatial Environments

Jonas Arruda, Emad Alamoudi, Robert Mueller, Marc Vaisband, Ronja Molkenbur, Jack Merrin, Eva Kiermaier, Jan Hasenauer

The paper uses a Cellular Potts model and neural posterior estimation to infer cell migration dynamics in microfabricated environments, showing improved parameter inference over classical methods.

npj Systems Biology and Applications · Jan 29, 2026Peer-reviewedCell Biology

FitMultiCell: Simulating and parameterizing computational models of multi-scale and multi-cellular processes

Emad Alamoudi, Yannik Schälte, R. Müller, Jörn Starruß, Nils Bundgaard, Frederik Graw, Lutz Brusch, Jan Hasenauer

FitMultiCell provides a scalable pipeline for modeling, simulating, and parameterizing multi-scale multi-cellular processes using Morpheus and pyABC.

Bioinformatics · Nov 1, 2023Peer-reviewedSystems Biology

Robust adaptive distance functions for approximate Bayesian inference on outlier-corrupted data

Yannik Schälte, Emad Alamoudi, Jan Hasenauer

This paper introduces robust distance functions for ABC that handle outliers, showing improved performance on corrupted data while maintaining comparable results on clean data.

bioRxiv · Jul 29, 2021 · PreprintSystems Biology