Chao Pan

Interpretable Online Network Dictionary Learning for Inferring Long-Range Chromatin Interactions

This paper introduces an interpretable online dictionary learning method for analyzing long-range chromatin interactions in Drosophila using ChIA-Drop data.

Inferring Single-Molecule Chromatin Interactions via Online Convex Network Dictionary Learning

The paper introduces an algorithm to infer chromatin interaction patterns from ChIA-Drop data and demonstrates its ability to reconstruct interaction networks and identify functional chromatin elements.

Rewritable Two-Dimensional DNA-Based Data Storage with Machine Learning Reconstruction

This paper introduces a 2D DNA-based data storage system that encodes information in both sequence and backbone structure, using machine learning for error correction and data reconstruction.

Expanding the Molecular Alphabet of DNA-Based Data Storage Systems with Neural Network Nanopore Readout Processing

This paper introduces an extended 11-letter DNA alphabet for data storage, using nanopore readout and neural networks to improve accuracy and density.

Image Processing in DNA

This paper proposes a method to store quantized images in DNA using signal processing and machine learning to reduce errors and costs without redundant oligos or rewriting.