Author

Alex Patak

European CommissionORCID 0000-0002-9282-188XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Antonio Puertas GallardoiD· 1 shared Arturo BonomettiiD· 1 shared Björn Andreas GrüningiD· 1 shared Bradley W. LanghorstiD· 1 shared Daniel FornikaiD· 1 shared Daniel J BlankenbergiD· 1 shared Dave BouvieriD· 1 shared David Anderson de Lima MoraisiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Antonio Puertas GallardoORCID

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2 papers

Recent·Most cited

miss-SNF: a multimodal patient similarity network integration approach to handle completely missing data sources

Jessica Gliozzo, Mauricio A Soto Gomez, Arturo Bonometti, Alex Patak, Elena Casiraghi, Giorgio Valentini

miss-SNF integrates multimodal patient data with missing sources by recovering patient similarities and identifying clinically relevant subgroups.

Bioinformatics · Mar 29, 2025Peer-reviewedBioinformatics

Expanding the Galaxy's reference data

VIJAY NAGAMPALLI, Jayadev Joshi, Nate Coraor, Jennifer Hillman‐Jackson, Dave Bouvier, Marius van den Beek, Ignacio Eguinoa, Frederik Coppens, John Davis, Michał Stolarczyk, Nathan C. Sheffield, Simon L. Gladman, Gianmauro Cuccuru, Björn Andreas Grüning, Nicola Soranzo, , Daniel J Blankenberg

The paper describes integrating refgenie into Galaxy to manage and share reference datasets, with tools for retrieval and a global repository for easy access.

Bioinformatics Advances · Jan 1, 2022Peer-reviewedBioinformatics