Zachary Z. Sun

This paper shows that deep learning language models can generate functional artificial proteins across families, with activities similar to natural proteins and structures resembling natural folds.

The paper introduces a MATLAB toolbox for simulating genetic circuits in E. coli-based cell-free systems, demonstrating its ability to predict circuit behavior using Bayesian parameter inference.

This paper discusses the development of E. coli-based cell-free systems for synthetic biology, focusing on standardizing extract and energy preparation methods.

The paper explores protein degradation in a TX-TL cell-free system using ClpXP protease, highlighting its role in circuit dynamics.