Vipul Singhal

The paper introduces SACCELERATOR, a framework for spatially aware clustering that improves benchmarking by incorporating expert feedback and consensus analysis across diverse datasets.

BANKSY integrates cell type clustering and tissue domain segmentation using spatial transcriptomic data, identifying novel niche-dependent cell states in mouse brain regions.

DUBStepR improves single-cell clustering by selecting features using gene-gene correlations and a Density Index, outperforming existing methods and detecting rare cell populations.

The paper introduces a MATLAB toolbox for simulating genetic circuits in E. coli-based cell-free systems, demonstrating its ability to predict circuit behavior using Bayesian parameter inference.

The paper explores protein degradation in a TX-TL cell-free system using ClpXP protease, highlighting its role in circuit dynamics.